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c1 fluidigm platform  (fluidigm)


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    Structured Review

    fluidigm c1 fluidigm platform
    C1 Fluidigm Platform, supplied by fluidigm, used in various techniques. Bioz Stars score: 96/100, based on 2081 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/c1+platform/C1/pm41534523-343-5-6
    Average 96 stars, based on 2081 article reviews
    c1 fluidigm platform - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    other:

    Article Title: MHC-I upregulation safeguards neoplastic T cells in the skin against NK cell-mediated eradication in mycosis fungoides
    Article Snippet: However, a major constraint of the Fluidigm C1 platform is its capacity to capture and process a maximum of 96 individual cells per sample.

    Single Cell:

    Article Title: Unveiling heterogeneity in MSCs: exploring marker-based strategies for defining MSC subpopulations.
    Article Snippet: .. Additionally, the C1 platform, also known as Fluidigm C1, is an advanced single-cell analysis technology platform. ..

    Article Title: Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes.
    Article Snippet: .. In GSE110499, single-cell gene expression was measured using the Fluidigm C1 platform and the normalized measures of single-cell gene expression (TPM) available in the data repository were used as input for GSEA. ..

    Article Title: Efficient genetic screening method
    Article Snippet: .. In some embodiments, production-scale single-cell RNA sequencing may be performed using the Fluidigm C1 platform, and more recently has implemented two droplet-based methods, Drop-Seq (Macosko et al. 2015 Cell, 161(5): 1202-1214) and In-Drop (Klein et al. 2015 Cell, 161(5): 1187-1201). ..

    Article Title: Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes
    Article Snippet: .. In GSE110499, single-cell gene expression was measured using the Fluidigm C1 platform and the normalized measures of single-cell gene expression (TPM) available in the data repository were used as input for GSEA. ..

    Article Title: Unveiling heterogeneity in MSCs: exploring marker-based strategies for defining MSC subpopulations
    Article Snippet: .. Additionally, the C1 platform, also known as Fluidigm C1, is an advanced single-cell analysis technology platform. ..

    Gene Expression:

    Article Title: Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes.
    Article Snippet: .. In GSE110499, single-cell gene expression was measured using the Fluidigm C1 platform and the normalized measures of single-cell gene expression (TPM) available in the data repository were used as input for GSEA. ..

    Article Title: Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes
    Article Snippet: .. In GSE110499, single-cell gene expression was measured using the Fluidigm C1 platform and the normalized measures of single-cell gene expression (TPM) available in the data repository were used as input for GSEA. ..

    Generated:

    Article Title: GLMsim: a GLM-based single cell RNA-seq simulator incorporating batch and biological effects
    Article Snippet: .. The Tung dataset[ ] was generated on the Fluidigm C1 platform and was used to explore the sources of technical variation in scRNA-seq technology. ..

    RNA Sequencing:

    Article Title: Efficient genetic screening method
    Article Snippet: .. In some embodiments, production-scale single-cell RNA sequencing may be performed using the Fluidigm C1 platform, and more recently has implemented two droplet-based methods, Drop-Seq (Macosko et al. 2015 Cell, 161(5): 1202-1214) and In-Drop (Klein et al. 2015 Cell, 161(5): 1187-1201). ..



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    (a) Scheme of GRN analysis <t>using</t> <t>Fluidigm</t> <t>C1</t> scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.
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    (a) Scheme of GRN analysis <t>using</t> <t>Fluidigm</t> <t>C1</t> scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.
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    (a) Scheme of GRN analysis <t>using</t> <t>Fluidigm</t> <t>C1</t> scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.
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    Image Search Results


    (a) Scheme of GRN analysis using Fluidigm C1 scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.

    Journal: bioRxiv

    Article Title: Hox – Meis -relayed topographical genetic switch underlies cardiopharyngeal neural crest diversification, revealed by multimodal analysis

    doi: 10.1101/2025.11.09.687497

    Figure Lengend Snippet: (a) Scheme of GRN analysis using Fluidigm C1 scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.

    Article Snippet: To elucidate these GRNs, we utilized additional scRNA-seq datasets from EYFP + NCCs isolated at E11.5, E12.5, E14.5 and E17.5 from Wnt1-Cre;R26R-EYFP mouse hearts, generated using the Fluidigm C1 platform.

    Techniques: